Kudela, R.M., W.P. Cochlan, and R.C. Dugdale. 1997. Carbon and nitrogen uptake response to light by phytoplankton during an upwelling event. Journal of Plankton Research 19: 609-63.
Kudela, R.M., and W.P. Cochlan. 2000. Nitrogen and carbon uptake kinetics and the influence of irradiance for a red tide bloom off southern California. Aquatic Microbial Ecology 21: 31-47.(pdf)
Cochlan, W.P. 2001. The heterotrophic bacterial response during a mesoscale iron enrichment experiment (Iron Ex II) in the eastern equatorial Pacific Ocean. Limnology and Oceanography 46: 428-435. (pdf)
Cochlan, W.P., and D.A. Bronk. 2001. Nitrogen uptake kinetics in the Ross Sea, Antarctica. Deep-Sea Research II 48: 4127-4153. (pdf)
Cochlan, W.P., D.A. Bronk, and K.H. Coale. 2002. Trace metals and nitrogenous nutrition of Antarctic phytoplankton: experimental observations in the Ross Sea. Deep-Sea Research II 49: 3365-3390. (pdf)
Cochlan, W.P., and D.A. Bronk. 2003. Effects of ammonium on nitrate utilization in the Ross Sea: Implications for ƒ-ratio estimates. In: G. DiTullio, G.R, Dunbar, R.B. [Eds.], Biogeochemistry of the Ross Sea. AGU Antarctic Research Series 78: 159-178.
Coale, K.H., K.S. Johnson, F.P. Chavez, K.O. Buesseler, R.T. Barber, M.A. Brzezinski, W.P. Cochlan, F.J. Millero, P.G. Falkowski, J.E. Bauer, R.H. Wanninkhof, R.M. Kudela, M.A. Altabet, B.E. Hales, T. Takahashi, M.R. Landry, R.R. Bidigare, X. Wang, Z. Chase, P.G. Strutton, G.E. Friederich,M.Y. Gorbunov, V.P. Lance, A.K. Hilting, M.R. Hiscock, M. Demarest, W.T. Hiscock, K.A. Sullivan, S.J. Tanner, R.M. Gordon, C.N. Hunter, V.A. Elrod, S.E. Fitzwater, J.L. Jones, S. Tozzi, M. Koblizek, A.E. Roberts, J. Herndon, J. Brewster, N. Ladizinsky, G. Smith, D. Cooper, D. Timothy, S.L. Brown, K.E. Selph, C.C. Sheridan, B.S. Twining and Z.I. Johnson. 2004. Southern Ocean Iron Enrichment Experiment: Carbon Cycling in High- and Low-Si Waters. Science 304: 408-414.
Kudela, R., W. Cochlan, and A. Roberts. 2004. Spatial and temporal patterns of Pseudo-nitzschia species in central California related to regional oceanography. In: K.A. Steidinger, J.H. Landsberg, C.R. Tomas, and G.A. Vargo [Eds.]. Harmful Algae 2002. Florida Fish and Wildlife Conservation Commission, Florida Institute of Oceanography, and Intergovernmental Oceanographic Commission of UNESCO. (pdf)
Wells, M.L., C.G. Trick, W.P. Cochlan, M.P. Hughes, and V.L. Trainer. 2005. The synergy of iron, copper and the toxicity of diatoms. Limnology and Oceanography 50: 1908-1917. .(pdf)
Armstrong, M.D., W.P. Cochlan, N.C. Ladizinsky, , and R.M. Kudela. 2007. Nitrogenous preference of toxigenic Pseudo-nitzschia australis (Bacillariophyceae) from field and laboratory experiments. Harmful Algae 6: 206-217. (pdf)
Cochlan, W.P. (In review). Nitrogen Uptake in the Southern Ocean. In: Nitrogen in the Marine Environment, D. Capone, E. Carpenter, M. Mulholland, and D. Bronk [Eds.]. (Invited review chapter).
Herndon, J., and W.P. Cochlan. 2007. Nitrogen utilization by the raphidophyte Heterosigma akashiwo: growth and uptake kinetics in laboratory cultures. Harmful Algae 6: 260-270. (pdf)
Hickey, B., A. MacFadyen, W.P. Cochlan, R.M. Kudela, K. Bruland, and C.G. Trick. 2006. Evolution of water column physical, chemical and biological properties in the Pacific Northwest following the delayed onset of local upwelling. Geophysical Research Letters 33: L22S02. (pdf)
Kudela, R.M., W.P. Cochlan, T.D. Peterson, and C.G. Trick. 2006. Impacts on Phytoplankton Biomass and Productivity in the Pacific Northwest During the Warm Ocean Conditions of 2005. Geophysical Research Letters. 33: L22S06. (pdf)
Trainer, V.L., W.P. Cochlan, A. Erickson, B.D. Bill, F.H. Cox, J.A. Borchert and K.A. Lefebvre. 2007. Recent domoic acid closures of shellfish harvest areas in Washington State inland waterways. Harmful Algae 6: 449-459. (pdf)